PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01003772G0180
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family ERF
Protein Properties Length: 219aa    MW: 23172.8 Da    PI: 5.1085
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01003772G0180genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.81.6e-1955104255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       y+GVr ++ +g+Wv+eIr+p++   + r++lg+f+++e+Aa+a++aa+++++g
  PH01003772G0180  55 TYRGVRMRS-WGKWVSEIREPRK---KSRIWLGTFDSPEMAARAHDAAALAIKG 104
                      69****998.**********843...6***********************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103222.86655112IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.1E-3255113IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-2155112IPR016177DNA-binding domain
PfamPF008473.0E-1355104IPR001471AP2/ERF domain
SMARTSM003808.3E-3855118IPR001471AP2/ERF domain
CDDcd000186.21E-2156113No hitNo description
PRINTSPR003672.9E-105667IPR001471AP2/ERF domain
PRINTSPR003672.9E-107894IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MQEEHALSPV SNGSTTCGSC SSSLGSGPPT ATSPSDESGG GGGRKRPRRE LKHPTYRGVR  60
MRSWGKWVSE IREPRKKSRI WLGTFDSPEM AARAHDAAAL AIKGRAAHLN FPEISHELPR  120
PATAAPDDVR AAAALAAAMD RAPTAAAAQE TGNAEEPSSA TVHALPGDDG VDLALFDLPE  180
VLLEFGFALS PSTYDLSWYD VAADDFGFEP APLLLWEH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-1452112263ATERF1
3gcc_A3e-1452112263ATERF1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9701802e-96EU970180.1 Zea mays clone 341615 dehydration-responsive element-binding protein 1B mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003572772.18e-76PREDICTED: ethylene-responsive transcription factor ERF038-like
SwissprotQ8LBQ72e-43ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBLA0A0Q3FR958e-76A0A0Q3FR95_BRADI; Uncharacterized protein
TrEMBLF2CTP35e-76F2CTP3_HORVD; Predicted protein
STRINGGRMZM2G041839_P013e-71(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15935354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16750.18e-28ERF family protein